Applications

(more to come)

Tracing of inputs to retrosplenial cortex (RSP)

Input cell somas detected by cellfinder, aligned to the Allen Reference Atlas, and visualised in brainrender along with RSP.

Data courtesy of Sepiedeh Keshavarzi and Chryssanthi Tsitoura. Details here

Tracing of Neuropixels silicon probe track in primary visual cortex

Raw serial two-photon image aligned to the Allen Reference Atlas, Neuropixels probe traced in standard space and visualised in brainrender along with VISp. A tutorial on how to do this can be found here.

Data courtesy of Mateo Vélez-Fort